rs49819983 SNP Detail

Summary

• ID
  rs49819983
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18301208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTG TGTGGTGGGG TCTGTGACCA
  Y
  GACACTGCTC AGTCACTTCC ACTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	MSM/Ms	SM/J
ss148452242	ENSMUSSNP2389323	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
ss322115421	CHEV_7_19152632	CHEVERUD	SCREENING_POP	f	SNP			C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	MSM/Ms	SM/J
rs49819983					SNP	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18301208 () rs orientation: forward

Symbol	Name	Function Class
Psg27	pregnancy-specific beta-1-glycoprotein 27	within coordinates
Tssr2095	transcription start site region 2095	266 bp downstream
Tssr70834	transcription start site region 70834	86 bp upstream
Tssr70835	transcription start site region 70835	4 bp downstream
Tssr70836	transcription start site region 70836	35 bp downstream
Tssr70837	transcription start site region 70837	91 bp downstream
Tssr70838	transcription start site region 70838	235 bp downstream