rs49820512 SNP Detail

Summary

• ID
  rs49820512
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:45948435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTTCACGGG ATCTGGAGGC CTTGAGAACA GTCAGTGAGG
  TAGAGTGACT GCAGACCCGG GGAGAAAGCA AAATCTACGA GTTGTAAAGT GACCCATGAT
  S
  CCCAAATGAG CAGTTGCTAT TAATATTTTC CTTTCCCCCT TCCTGTCCTT CTATGACTAT
  ATACTGATGA ATCTGGAATC GTACCATTCA TACACTTTA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss132095898	ENSMUSSNP5788300	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss323657877	CHEV_11_45871110	CHEVERUD	SCREENING_POP	f	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49820512					SNP	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:45948435 () rs orientation: forward

Symbol	Name	Function Class
Adam19	ADAM metallopeptidase domain 19	within coordinates
Cpgi2772	CpG island 2772	981 bp distal
Cpgi2773	CpG island 2773	307 bp distal
Gm72342	predicted gene, 72342	within coordinates
Rr402508	regulatory region 402508	1602 bp downstream
Rr445869	regulatory region 445869	1606 bp distal
Rr445870	regulatory region 445870	within coordinates
Rr445871	regulatory region 445871	401 bp proximal
Rr445872	regulatory region 445872	565 bp proximal
Tssr3474	transcription start site region 3474	1641 bp downstream
Tssr101088	transcription start site region 101088	1540 bp downstream
Tssr101089	transcription start site region 101089	1511 bp downstream
Tssr101090	transcription start site region 101090	1433 bp downstream
Tssr101091	transcription start site region 101091	1378 bp downstream
Tssr107582	transcription start site region 107582	501 bp downstream
Tssr107583	transcription start site region 107583	566 bp downstream