rs49821365 SNP Detail

Summary

• ID
  rs49821365
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:84344346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAATGAAT TCCACTCATT
  TTTCAATTTT TTAAAATTAC ATATATGTGT ATGTGTTTGT GTGGGTGCTT GCATGTGCTC
  ATTCATGACT GCTATGGCTC GCATGGGGAG ACCAGAGGAC AACTTTTGAG AGTTGATTCT
  TTTCTCCTTC CATCATGTGT GTTCTGGGGA TTGAATTCAG ACTTGGAGAC AAGTGTTTTT
  W
  CCTGCTGAAC CATCAAAATG ACCTTATTTA TGTATCTTTT TTTATACCAG AACAATACTG
  TTTTGATTAC CACAGTCCAA TTTAGAATAG ATCTAAATTT CTTTTTAGTT GTATTTCTTT
  ACTGGTAAAA GCCAGGTACA TGTTTTCCCC AATTTTTGCA GGGGGAAAAA AAAAAGTCTG
  GAGAGATGGC TCAGTTGTTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss137927386	ENSMUSSNP1666683	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49821365					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:84344346 () rs orientation: forward

Symbol	Name	Function Class
Ptgr2	prostaglandin reductase 2	within coordinates
Rr469618	regulatory region 469618	1778 bp proximal
Tssr114334	transcription start site region 114334	1350 bp downstream