rs49821947 SNP Detail

Summary

• ID
  rs49821947
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:20906836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGGTACT ACCACCTGCA
  GGTCCTTTTG TATTTGTGCA GTGTTCTTTG ACAGATGTGT GAATAAGGCA TGCTAGTGCA
  CACTTGTAAG CCCAGCACTA GGGAAGTAGA GGCAGGAGAA TTTGGAGTTC AAGACCAACC
  TGAGCTAAAC AAGACCCTGC CCAAACATGT AGTACATACA CATGAAGAAT GGGAGAGAAA
  M
  AGACAAGACC AGTGAAATTA CATAAAATGA AGCGTTAAAA AGCTTTTTTT TTTTTTTGGA
  AAATTATTTT TAGCTGTAGT GGTGCATGCC TTTAATCCTA GCACTTGGGA GGCAGAGGCA
  GGTGGATTTC TGAGTTCGAG GCCAGCCTGG TCTACAGAGT GAGTTCCAGG ACAGCCAGAG
  CTATAGAGAG AAACCCTGTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61357520	NES16731470	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49821947					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61357520	NES16731470	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:20906836 () rs orientation: forward

Symbol	Name	Function Class
Rr193936	regulatory region 193936	36 bp distal
Rr203233	regulatory region 203233	61 bp distal
Rr208290	regulatory region 208290	1363 bp proximal