rs49822602 SNP Detail

Summary

• ID
  rs49822602
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:87751298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGACCGTCT TCAGCACAGG
  AGCCACCCGT TCTCAATGCA ATTATTTTTG TGATGTTTGC AGTCCCCGTC CCTATCGACA
  AACAAGAAAA CGAAGCTGCA AAGGAGAAGG AAAGGTGAGC CAAAGACACA CCCAGAAGGG
  GAACAGGAGG AGGTAACGGA GGCAACTCGG AAAATCAGAG GTCCCAGAGA AAAAAGACTG
  R
  GCTAGGAACT GTGAGCAAGC AGGCAAAGAG GGACATGCGG GAACAGGGAT GAAGGACGTG
  CGGGAACAGG GATGAAGAAG GAGCAGACAG GAGCCCAGGA AAGCCGCAGA GGAGCTGAAG
  CAAGGCAGTC CTCACTAAGC TAGATAATGT CTGTGACGGA AGTAAGAAAG TCCTCCTCTG
  GGATACGGCA CTTACACATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61301453	NES16910373	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49822602					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61301453	NES16910373	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:87751298 () rs orientation: forward

Symbol	Name	Function Class
Igf1	insulin-like growth factor 1	within coordinates
Tssr95088	transcription start site region 95088	1814 bp downstream
Tssr95089	transcription start site region 95089	1797 bp downstream
Tssr95090	transcription start site region 95090	1774 bp downstream
Tssr95091	transcription start site region 95091	1752 bp downstream
Tssr95092	transcription start site region 95092	1734 bp downstream
Tssr95093	transcription start site region 95093	1700 bp downstream
Tssr95094	transcription start site region 95094	1675 bp downstream
Tssr95095	transcription start site region 95095	1667 bp downstream
Tssr95096	transcription start site region 95096	1049 bp downstream
Tssr95097	transcription start site region 95097	1023 bp downstream
Tssr95098	transcription start site region 95098	897 bp downstream
Tssr95099	transcription start site region 95099	123 bp downstream
Tssr95100	transcription start site region 95100	865 bp upstream
Tssr95101	transcription start site region 95101	922 bp upstream
Tssr95102	transcription start site region 95102	956 bp upstream
Tssr95103	transcription start site region 95103	991 bp upstream
Tssr95104	transcription start site region 95104	1040 bp upstream
Tssr98816	transcription start site region 98816	82 bp upstream