rs49822606 SNP Detail

Summary

• ID
  rs49822606
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:14528872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGTTGACC AGGGTCTCTT
  TCTTAATTGG AGTGTCTCCC ACATAGCCAG GTGGTGGTAT TTACTAGCTC TCCATGCATT
  GTTATGTGAC GTTTGCCCTT GGTCCAGGCA GCCTCTGAAG TCCCAGATTA TTCTAGCATG
  TCATAATTGG GGTGTTACTG GTTGCCATCA TAGACTACCA GCTCAAAGGA ACACGTAGTC
  R
  TGAGGGCCAG TAATTCATAG AAGTGCCTCC TTTGTGGTCT ATGGTAGAGT TTAACAATGG
  CTTGATGCAG TCACCGGTGG TAATCCTCCA AGGCCCCAAA GGCTTTTTGT TGCTTTGCTC
  TGCTTTGCTT TATTTCTTGA GGCAGGCTCT CTGTGTAGCC TAGGCTGGCC TGCAATTCAT
  ACAGCCCAGG TAACTTCCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62080643	NES17154353	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A	G	A	A	G	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49822606					SNP	G	A	A	A	A	A	G	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62080643	NES17154353	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14528872 () rs orientation: forward

Symbol	Name	Function Class
Flnb	filamin, beta	within coordinates
Gm62553	predicted gene, 62553	within coordinates
Rr487923	regulatory region 487923	653 bp distal
Tssr124220	transcription start site region 124220	747 bp upstream