rs49822688 SNP Detail

Summary

• ID
  rs49822688
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:22533801 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTTCCCAGC CCCGCAGCTC CTCTAACCTG GGACCTTTCG
  GGGCCGCCGG GCTGCTGTGC CGACAGTTGC GCTGCCGACT GCCGCCTCTC CCAGGCCCTC
  Y
  GCCACGGAAA TGCTTCTGAG GAGACTTTTC CGGGTCCAGA AACAGCTAGG ACGCAGAAAC
  CGAAAGGTAG AAAGTTGATT GGTGGAAGTC CCTGTCATT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145304123	ENSMUSSNP4417985	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss325324150	CHEV_17_22451787	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49822688					SNP	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:22533801 () rs orientation: forward

Symbol	Name	Function Class
Gm7072	predicted gene 7072	mRNA-UTR
Gm53992	predicted gene, 53992	102 bp upstream
Rr523017	regulatory region 523017	within coordinates
Rr523018	regulatory region 523018	7 bp proximal
Tssr146602	transcription start site region 146602	11 bp upstream
Tssr146603	transcription start site region 146603	within coordinates