rs49823496 SNP Detail

Summary

• ID
  rs49823496
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84470920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGCTGATAG ATGACTGTGC CTTACTTAGT TCAAGGTTTA
  ATCCCTTGGG GTTTGCGCAA GAGCCAGCAG AGAGGAGGTT GGGAGGGGAA TGGCCATTCC
  K
  AGTCTTAAGT GGAATTTGGA CCTTTTTTTT TTCCTCCAAA AAATGGTATA ACCTCAGGGC
  TCAATGTCCC CACAGACGCC CTGGCAGGCA GAGCCTCCC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss145361221	ENSMUSSNP3477404	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss322745695	CHEV_8_86268190	CHEVERUD	SCREENING_POP	f	SNP		G	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs49823496					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84470920 () rs orientation: forward

Symbol	Name	Function Class
Gm46046	predicted gene, 46046	within coordinates
Rr666304	regulatory region 666304	1475 bp distal
Tssr2621	transcription start site region 2621	1726 bp downstream