rs49824480 SNP Detail

Summary

• ID
  rs49824480
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:15639346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TTCCCCATCA CATGTCACCT TCATATCATG AAATTCTGCA
  CGTGCCGCAA CTGTCCCCAA CCTTCACATT CCCCAGACTA CCCATGTGCC TTCAAATGTC
  Y
  GTCTGCAGAT CTTTCCTTAG TCTTGAATTC TACTTCAGTA GGCAAGGCAG AGAAGAGGGT
  GGTGGCAAGG AAGGCTAGAA TTAGGGTGTC TGGAAGAAAG T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss136207114	ENSMUSSNP5532357	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49824480					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:15639346 () rs orientation: forward

Symbol	Name	Function Class
Slc36a4	solute carrier family 36 (proton/amino acid symporter), member 4	Intron
Tssr83873	transcription start site region 83873	1301 bp upstream