rs49825306 SNP Detail

Summary

• ID
  rs49825306
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164174804 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTGG CAATTTCGTT CTGTAGGAAA
  R
  ATGTTTGAGA ACAATGTTCT CAAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss148223066	ENSMUSSNP6929249	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320605467	CHEV_2_164158620	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs49825306					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164174804 () rs orientation: forward

Symbol	Name	Function Class
Svs5	seminal vesicle secretory protein 5	within coordinates
Tssr744	transcription start site region 744	445 bp upstream
Tssr745	transcription start site region 745	488 bp upstream
Tssr746	transcription start site region 746	499 bp upstream
Tssr747	transcription start site region 747	512 bp downstream
Tssr748	transcription start site region 748	533 bp upstream
Tssr749	transcription start site region 749	565 bp upstream
Tssr750	transcription start site region 750	578 bp upstream
Tssr751	transcription start site region 751	632 bp upstream
Tssr752	transcription start site region 752	701 bp upstream
Tssr753	transcription start site region 753	708 bp upstream
Tssr754	transcription start site region 754	1380 bp upstream
Tssr21562	transcription start site region 21562	148 bp downstream
Tssr21563	transcription start site region 21563	139 bp downstream
Tssr21564	transcription start site region 21564	108 bp downstream
Tssr21565	transcription start site region 21565	95 bp downstream
Tssr21566	transcription start site region 21566	84 bp downstream
Tssr21567	transcription start site region 21567	72 bp downstream
Tssr21568	transcription start site region 21568	63 bp downstream
Tssr21569	transcription start site region 21569	411 bp upstream
Tssr21570	transcription start site region 21570	473 bp upstream
Tssr21571	transcription start site region 21571	504 bp upstream
Tssr21572	transcription start site region 21572	521 bp upstream
Tssr21573	transcription start site region 21573	550 bp upstream
Tssr21574	transcription start site region 21574	614 bp upstream
Tssr21575	transcription start site region 21575	1392 bp upstream
Tssr21576	transcription start site region 21576	1408 bp upstream
Tssr21577	transcription start site region 21577	1427 bp upstream
Tssr27433	transcription start site region 27433	469 bp downstream
Tssr27434	transcription start site region 27434	492 bp downstream
Tssr27435	transcription start site region 27435	520 bp downstream
Tssr27436	transcription start site region 27436	539 bp downstream
Tssr27437	transcription start site region 27437	560 bp downstream
Tssr27438	transcription start site region 27438	590 bp downstream
Tssr27439	transcription start site region 27439	604 bp downstream
Tssr27440	transcription start site region 27440	614 bp downstream
Tssr27441	transcription start site region 27441	669 bp downstream
Tssr27442	transcription start site region 27442	677 bp downstream
Tssr27443	transcription start site region 27443	740 bp downstream
Tssr27444	transcription start site region 27444	749 bp downstream
Tssr27445	transcription start site region 27445	1365 bp downstream
Tssr27446	transcription start site region 27446	1409 bp downstream
Tssr27447	transcription start site region 27447	1504 bp downstream