rs49825507 SNP Detail

Summary

• ID
  rs49825507
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:92899918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAC GCCCTAGAAA CGGAACCGGT
  W
  AGAGCAAAAA GCTGGGGGGT GGGGG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148376516	ENSMUSSNP6815147	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss325064827	CHEV_15_92832468	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49825507					SNP	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:92899918 () rs orientation: forward

Symbol	Name	Function Class
Gm30085	predicted gene, 30085	within coordinates
Gm62083	predicted gene, 62083	within coordinates
Rr391110	regulatory region 391110	within coordinates
Rr508114	regulatory region 508114	139 bp distal
Rr508115	regulatory region 508115	within coordinates
Rr508116	regulatory region 508116	13 bp proximal
Rr508117	regulatory region 508117	152 bp proximal
Rr508118	regulatory region 508118	375 bp proximal
Rr508119	regulatory region 508119	1391 bp proximal
Tssr132761	transcription start site region 132761	167 bp upstream