rs49825522 SNP Detail

Summary

• ID
  rs49825522
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70418690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTGCGCTGT TCTTTTATCA TTACTAGCAT TATTGGATTA
  TTTTGGGGAT GGCTGGTTGC ATTATGTTTT TAAATAAAAT GGTTTGTTTT ATGTGCATTG
  K
  TGTTCTGCCT GCATGTATGT GTGAGGGTGC CAGATTATTG AAATTTGAGT TACAGACAGT
  TGTGAGTTGC CCTGTGGGTG CTGGGAATTG AAACCAGGC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132372392	ENSMUSSNP2660725	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
ss323735986	CHEV_11_70341366	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49825522					SNP	T	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70418690 () rs orientation: forward

Symbol	Name	Function Class
Psmb6	proteasome (prosome, macropain) subunit, beta type 6	6 bp downstream
Tssr102729	transcription start site region 102729	1933 bp downstream
Tssr102730	transcription start site region 102730	1889 bp downstream
Tssr102731	transcription start site region 102731	1830 bp downstream
Tssr102732	transcription start site region 102732	1050 bp upstream