rs49825708 SNP Detail

Summary

• ID
  rs49825708
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29580251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGCAGGCT AGCAGGATGG
  AGCGAGCCTG TGAGAAGCAG GACTCAGTGT GCAACCTGGT GGCTGTGTTT GAGAACAACA
  GGTACAGATG GTGGGGGAGG GGTCGAGCCC TTCTATCTGA TCTGGTACTT TGGGGCAGCA
  CCTGGGGTCC CTCCATCCTG GGTGCCTGGC AGTACAGGCA ACCACTGCTC TTGTGGTAGT
  R
  AGCTGGACAG GGTGAGCATG GGAGATCTCC AATCCATGCA CACACACATC CCACTCACAC
  CAGGACACAA ATGGGAACAG GAAGGCGGGA CACAGATGGA ATGTGGCTGA CTGGGACAAA
  GCAGAGCCAT GCTCACCAGG CCTCTCTCCT AAGTTCCTTT CTATACCTCA GGGCTTACTC
  TGATGGCCCT AGGGTGTGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60557922	NES16578189	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49825708					SNP	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60557922	NES16578189	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29580251 () rs orientation: forward

Symbol	Name	Function Class
Fgd2	FYVE, RhoGEF and PH domain containing 2	within coordinates
Rr405148	regulatory region 405148	246 bp downstream
Rr405149	regulatory region 405149	1803 bp upstream
Rr524885	regulatory region 524885	353 bp distal
Rr524886	regulatory region 524886	134 bp distal
Rr524887	regulatory region 524887	343 bp proximal
Rr524888	regulatory region 524888	1923 bp proximal
Tssr143531	transcription start site region 143531	357 bp downstream
Tssr143532	transcription start site region 143532	337 bp downstream
Tssr143533	transcription start site region 143533	309 bp downstream
Tssr143534	transcription start site region 143534	295 bp downstream