rs49826046 SNP Detail

Summary

• ID
  rs49826046
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:44022849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGATTAGC ATGCTTGCCA
  AGGTCAAGGT GGAAAGATTT TATGAGTGAA TTGCAGGAAG AGAGGCAGCC ATATTCAGCC
  TAGTGTATGG AAAGAAACAA CGGGCTTTAA GGATGGTCAC TCTAAAGCCG CAGATGTTCA
  TTCACAGGAT ACAGAAAATC TGGAGCCGTA AGGTATCTTA GCAATGGTCA GCTCTTCTAG
  C
  AAAAGAGGCA CTTCCCCATC CTACCCTACT TCCCATTTCT CCCTCTATAG CTTTGCTTTT
  ATACGAGTTT TAAACTCATG TTTGAGACAA GTAACATAGT AGTCTCCTTT ATCCTGAGAC
  GAGGGAAGAT AATTTCAAGA CAGCCCACTG GACACCTGAA ACTGTGGACG ATACCAAACC
  CTGATAGGGG GGTGGGCAGT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147091194	ENSMUSSNP6810000	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs49826046					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:44022849 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1509	CpG island 1509	1604 bp proximal
Crybg1	crystallin beta-gamma domain containing 1	within coordinates
D10Mit38	DNA segment, Chr 10, Massachusetts Institute of Technology 38	768 bp distal
Gm67081	predicted gene, 67081	1205 bp upstream
Rr430916	regulatory region 430916	1990 bp proximal
Tssr97502	transcription start site region 97502	1934 bp downstream
Tssr97503	transcription start site region 97503	1963 bp downstream
Tssr97504	transcription start site region 97504	1994 bp downstream