rs49828387 SNP Detail

Summary

• ID
  rs49828387
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:37230519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCATTCTT TAAAAAAAAA
  AAAAGAAGCT TGTAGTCTTG GCAGCAAAAA GTAAAGACTA TCAATTCATT GCTTTTATTT
  CCTAACCTGA CAAAGAAAAC TGAGGCCAGA TGGTTGTATA CCCAGGTTCT GTGGCTTTAA
  TGTTAGGGTT TAGAATGTGA CACTTAGTTT GAAGAGTTAG TACTTGGGCA CTAAGAGCCA
  Y
  TGAGTGACTG TCTGTACCTA CCTCAGCAAG TAGATGTCTA TACCCCATGA AATGCAGCAC
  TGAGAGCCCA CAGGAGCAAA ACTGGGTTTT GGTGCATAAA CGAGATTCTG CAATGTATTG
  CCAGCTAGAT GCTATTCAGG GACAAGAGTC TGAATGTCCC TGCTCATTCC CCCAAAGGAA
  TGACTTGCGT ATCACCAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61768029	NES17689010	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49828387					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61768029	NES17689010	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:37230519 () rs orientation: forward

Symbol	Name	Function Class
F13a1	coagulation factor XIII, A1 subunit	within coordinates
Rr271551	regulatory region 271551	1119 bp distal
Rr279043	regulatory region 279043	1201 bp distal
Rr281233	regulatory region 281233	1881 bp proximal
Rr283270	regulatory region 283270	719 bp distal