rs49828464 SNP Detail

Summary

• ID
  rs49828464
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53768160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATGTGCAA TTTGGGTAAT
  GTTGAGACTT TTATGGTGGT GGTAATGAAT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTCTGTGTGT CTGTGTGTCT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTCTGTGTGT GTGTGTTTTA TAGGAAGTAT TAAGAAAATC ATTAGCAGAG CATAAGCTTG
  C
  GAGAACTCAT TTAGTATGCT AAGATATTTG AAATTTTTAT TTAGGTGGTG ATTTTTCCCT
  CTTCGGTTTA GAACCATAAT TACATATAAA GGTCTTTGGT GATGAGAGAT GGAATGACTG
  ACCACTTTGG GGGAAAGAGA AATTAGTAAG GGCTTGAACC TCAAGGAGCA CCATTGCAAA
  GATGGCATCG ACTGGCGCGT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss137758539	ENSMUSSNP2727331	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49828464					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53768160 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr256685	regulatory region 256685	1160 bp distal
Rr263732	regulatory region 263732	1024 bp distal