rs49828572 SNP Detail

Summary

• ID
  rs49828572
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:104703436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTCGGACG GTGGAGATGA
  GGATGACGCT GCGTTCTTGG CCTTGGAACT CTTCCACAGA GCCCACCTAG AGTGCAGACA
  CAGGGCTTTA AAGATCAGAT AGGCCTAGGA GGAACCACGG TGACAGACCT GCTCTAGGGG
  ACAAAGCTGC CAGGGAGGTA CAGACAAGAC ACTGGGTACT TGGAGATGAG TAAGAGAATC
  R
  CAGAGCCCGG AAGAGGGCAG AAGGCCTGCT GTGAAGGTCT GTGGGACAGA GCCAGTTATA
  GGGTGGGGGG CCTGGAAACT GTTCAAAGCA AACGGCACTG TGCTGCAAAG GAACAGAGTG
  GGAGTTCTCA TCCCTGGAGG CAGCCACCAA TTTGGTCAGA AATTCTGAGG GAGAGGCCAG
  TAAATCCTAA CTCAGTGGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60431831	NES15936272	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49828572					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60431831	NES15936272	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104703436 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm66976	predicted gene, 66976			1559 bp upstream
Mov10	Mov10 RISC complex RNA helicase			Intron
				Noncoding-Transcript-Variant
Rhoc	ras homolog family member C			1661 bp downstream
Rr582617	regulatory region 582617			1069 bp distal
Tssr31062	transcription start site region 31062			1815 bp downstream
Tssr31063	transcription start site region 31063			213 bp downstream
Tssr34891	transcription start site region 34891			1661 bp upstream