rs49829291 SNP Detail

Summary

• ID
  rs49829291
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88502291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTC TCCAGCCTCT TCTTTTTTTT
  W
  AAAAAAAGAT TTATTTATTT ATTAT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss135470500	ENSMUSSNP4353652	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss320835713	CHEV_3_88398906	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs49829291					SNP	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88502291 () rs orientation: forward

Symbol	Name	Function Class
Rr397773	regulatory region 397773	1344 bp downstream
Tssr29977	transcription start site region 29977	1871 bp downstream
Tssr29978	transcription start site region 29978	1842 bp downstream
Tssr29979	transcription start site region 29979	1797 bp downstream
Tssr29980	transcription start site region 29980	877 bp downstream