rs49831941 SNP Detail

Summary

• ID
  rs49831941
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:120541523 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTCCTGTAC CTGGGTGAAA ATCAAACCGT TCGGGAGTTC
  CATTGAGGCC TCTGAGCGCA CCTGTTATCT CCGCAGGGAG CCCCAGATCT ATCTGTTCAG
  A
  GCTCTCGCGG CAAGGGCCCT GACTCTGCTG GGGGTTCTCT GTGAAAAGTC CCCCGCGCCA
  CCTCTCCTAC GGTTTGGGAG TGACACTCAG CCAGTCTCC                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss145318736	ENSMUSSNP834509	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs49831941					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:120541523 () rs orientation: forward

Symbol	Name	Function Class
2610027F03Rik	RIKEN cDNA 2610027F03 gene	563 bp upstream
Cpgi675	CpG island 675	within coordinates
Cpgi676	CpG island 676	510 bp proximal
Gm34352	predicted gene, 34352	within coordinates
Rr417218	regulatory region 417218	within coordinates
Rr417219	regulatory region 417219	623 bp proximal
Rr417220	regulatory region 417220	1660 bp proximal