rs49832829 SNP Detail

Summary

• ID
  rs49832829
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:48407494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTCTTAC GCATTTTCAC
  CGATGTGGGC GGTTAATATA GGCTACCAAA GAAAAGTTTA GCCGGGCATA GTGACACACA
  TTTTTAATCT CAAGACTCGG AAAGCAGGCT CTGAGTTACA GGCTAGCCGT TTGTTACATA
  GTCGAGGGGC TTAATATCCA TCCATGTGGG GCCAAGAAGA GGCCAGGAGG GCTTTTCTTA
  R
  GTAGTCACAA AGCTAGGTGA CTAGTTGTGA ATGATGTAGA GTCTTATAGT GCAGACTTGC
  CGTGTATTAA GGATGGTCTT GAACTCCCCC TTGCCTGGGC CTCCCAGGTG CTGGTGTTTA
  CAGGCGCGAG CCATACACCA GGCTTGAGTA AGCTGCTCAG TATGGAATCC AGCTGTGTCT
  GAGTTCTACA ATCCTCCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss61394050	NES16775905	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs49832829					SNP	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61394050	NES16775905	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:48407494 () rs orientation: forward

Symbol	Name	Function Class
1700121I08Rik	RIKEN cDNA 1700121I08 gene	within coordinates
Cpgi21716	CpG island 21716	174 bp distal
Gm5617	predicted gene 5617	222 bp downstream
Gm70225	predicted gene, 70225	within coordinates
Rbm7	RNA binding motif protein 7	895 bp upstream
Rr195326	regulatory region 195326	507 bp proximal
Rr206379	regulatory region 206379	within coordinates
Rr401354	regulatory region 401354	676 bp downstream
Tssr2862	transcription start site region 2862	296 bp upstream
Tssr84988	transcription start site region 84988	1137 bp downstream
Tssr84989	transcription start site region 84989	1079 bp downstream
Tssr84990	transcription start site region 84990	974 bp downstream
Tssr84991	transcription start site region 84991	928 bp downstream
Tssr84992	transcription start site region 84992	794 bp downstream
Tssr84993	transcription start site region 84993	743 bp downstream
Tssr84994	transcription start site region 84994	284 bp downstream
Tssr89390	transcription start site region 89390	1786 bp upstream
Tssr89391	transcription start site region 89391	1767 bp upstream
Tssr89392	transcription start site region 89392	1737 bp upstream
Tssr89393	transcription start site region 89393	1205 bp upstream
Tssr89394	transcription start site region 89394	921 bp upstream
Tssr89395	transcription start site region 89395	876 bp upstream
Tssr89396	transcription start site region 89396	859 bp upstream