rs49833096 SNP Detail

Summary

• ID
  rs49833096
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:160941839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAGCAGGC CTATAATCCT
  AGCACAGGGA ACATGGAGGG AAGAAGATCA GAACTTCAAG GTCTTGTCTC AAAATATACC
  AACCTCCCTC AAAAAAAAAA AAAAAGACTC AAATTTTCAA AAAATACTTA ATGTTATTTT
  AGATGTCTAT GTGTGCCTGA GCGTCAGCAT GTGAACCATG TGTGGGTACT CAAGAAACCC
  A
  TAACGACATC AGATCCTCTG GAGTTGCAGG TGGTTGATCT CCCCAAATGT GGGTTCTAAG
  AATGGAACCA CTCTCAAAAG CTTCTACACT AACATCAGAT TAGATGACTG TGGGTCCAGG
  AACTCTAAAT ATAACAAGCC TTATTTAAAA GCACCACATG TGTCAGATCA GTTAGACTCA
  GCCAGGCTTT ACTATGACAG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss145906414	ENSMUSSNP7150627	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs49833096					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:160941839 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Klhl20	kelch-like 20			Intron
				Noncoding-Transcript-Variant
Rr421756	regulatory region 421756			420 bp proximal