rs49834360 SNP Detail

Summary

• ID
  rs49834360
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134025647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTTCTGAC GTAACCTCGT
  TCTTAGTCAT TAATCAGATT GAGTCCCAAC AGGTGAAATG ACTTGCCTCG AACCAGTTCA
  CCTGAAACAT AATGAAAATA ATTATTTTAT TTTAGATTTG TGAAACACTT TTTCATTCAC
  TCATGATTCA TCTTGGAATA AGGACCCTTT TTTACCCTTT TTATTCTAAG GGGAGATGTT
  Y
  GGAGGGCACT GGGATGGAGC TCACATCACT GTGGGTGGGT GACTTTGATA AGTCTTTTTC
  ACCAGGCCCA GTGTCTGGTT TTCGTTTGAG TCTGTGGAGG GGTGGCTGAT ACGTATGTGG
  GGTGGAGGGG TGGGTGCCGT GGCGTGAGTG AGACAGTGTT CAAGAATTAG TTCTTCCCTT
  CCTGTTTGTT TTTTTGAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60847172	NES16015946	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49834360					SNP	C	C	C	C	C	C	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60847172	NES16015946	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134025647 () rs orientation: forward

Symbol	Name	Function Class
D5Mit141	DNA segment, Chr 5, Massachusetts Institute of Technology 141	366 bp distal