rs49834620 SNP Detail

Summary

• ID
  rs49834620
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:86808849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTACACA GAGGAAGAGA
  ATGTTACCTT CTGTACTCAT TTACAGGCTC GACTGTCCAA TCTTGACATT GTGACAAGAC
  ATTGTCATCT CCAGAGTTCA TAATTGAGAA ACATGTAATC TAGTCACAAA GTAATTTTAA
  AAACAAACAA ACAAACAAAA CCCCACAGAC CAGAATTTAA GTAGGTTTAT CAAATCGTAT
  Y
  AGACCACTTT TGTGTCTCTT TTGGGAAGCA TGGGTCCTGT GGCCTACAGG TTAGAAAGCC
  CGGGAAGAAC ATTCTAAATG CTTAGAGGAT GAATAGGCAC CATAAAGCAG ATATTTCATT
  GGCCACCGGA GGACACACAT GGAAGATCGG AACAGAAAAG TAGAATATTG GAAACTAAAC
  TGACTAGTCT AAAGAGGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52575641	NES15650192	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49834620					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52575641	NES15650192	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:86808849 () rs orientation: forward

Symbol	Name	Function Class
Gm49466	predicted gene, 49466	566 bp upstream