rs49834749 SNP Detail

Summary

• ID
  rs49834749
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:55593446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A ACCAAGGCTC AGTCTAACCA CGTACACTCT AGTGCCTCTT
  CAGGTCATCA GACAGCTCTA ACGTGGAAGG GGCAGAACAA AAGAAAAATA CTGGAAGCTG
  Y
  GAGATGGCAG CTCCGAGTTA GGTCCAAAGG CACACCCATC AGACTCTCAA GAGACGTCTT
  TGCAGAAGAG ATGAGAACCA AAGACTGATC TATTTCAAAC C                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss134182131	ENSMUSSNP6984031	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs49834749					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:55593446 () rs orientation: forward

Symbol	Name	Function Class
Ct45a	cancer/testis antigen 45	within coordinates
Tssr163412	transcription start site region 163412	1429 bp downstream
Tssr163413	transcription start site region 163413	1510 bp downstream
Tssr163414	transcription start site region 163414	1533 bp downstream
Tssr163415	transcription start site region 163415	1589 bp downstream
Tssr163416	transcription start site region 163416	1606 bp downstream
Tssr163417	transcription start site region 163417	1624 bp downstream