rs49836645 SNP Detail

Summary

• ID
  rs49836645
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:26387891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGA AGGGCCCTGG GCGTCACTCG
  C
  GACGTCTTCT AAGCCTCTTG GAGCG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss134694019	ENSMUSSNP5391015	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320687283	CHEV_3_26232664	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs49836645					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26387891 () rs orientation: forward

Symbol	Name	Function Class
A830092H15Rik	RIKEN cDNA A830092H15 gene	355 bp downstream
Cpgi13015	CpG island 13015	1608 bp distal
Cpgi13016	CpG island 13016	within coordinates
Nlgn1	neuroligin 1	1282 bp upstream
Rr77454	regulatory region 77454	within coordinates
Tssr32831	transcription start site region 32831	1922 bp upstream
Tssr32832	transcription start site region 32832	1893 bp upstream
Tssr32833	transcription start site region 32833	1841 bp upstream
Tssr32834	transcription start site region 32834	1825 bp upstream
Tssr32835	transcription start site region 32835	1799 bp upstream