rs49836769 SNP Detail

Summary

• ID
  rs49836769
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:36726117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTCTACCT GAGGAAGGTA
  ATGGGGTCCT TGGCAAACCT ACAAATTCCT CTCCCTACAC CCCATAAGAA CCTGCCCAGC
  AAATACCTGG GATTCCTGGA GAGCTTTTCC ACACAAAAGA GGCGTTCCCA GTTCACTGAG
  CTCCAGCCAG TCATCAACAT TCACCCTGAA AACTCCTCTC CACTCTCCAA AGTTCATATA
  Y
  AGCCCTTGTC CACCCAAATA AAGTAAGTGA GCACCAGCTA TTTCACTGAA GACCATCTAA
  GAGCCACTTC ATTGGGAGTC ATCTAAAAGA GCTGTAAGAC TAAAATCGCC AGAGAAGGCC
  TTCCTTGGTG AAGCCCTCCA CCCCATGCCC ACATGTGAGT TCAGCTGGAC TGAGAGCCAG
  TCCCAACCTG TTCCAGACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss147608085	ENSMUSSNP2014927	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs49836769					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:36726117 () rs orientation: forward

Symbol	Name	Function Class
A830021M18Rik	RIKEN cDNA A830021M18 gene	369 bp upstream
Cpgi7034	CpG island 7034	1463 bp proximal
Gm41297	predicted gene, 41297	within coordinates
Gm49263	predicted gene, 49263	637 bp downstream
Tssr131078	transcription start site region 131078	596 bp downstream
Tssr131079	transcription start site region 131079	447 bp upstream
Tssr131080	transcription start site region 131080	488 bp upstream
Tssr131081	transcription start site region 131081	519 bp upstream
Tssr131082	transcription start site region 131082	794 bp upstream
Tssr131083	transcription start site region 131083	987 bp upstream
Tssr131084	transcription start site region 131084	1033 bp upstream