rs49838235 SNP Detail

Summary

• ID
  rs49838235
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:7885440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGATCGGTG TAGGAATTCG
  AGAGCATCCG TTTGTGTTGG GAGACTGTCC TCCTGTCTCA TTTGGTGAGT GATCTGGTAA
  TCCTGCGGCT GAGGAGTTTG GCAACAAGAA AGTCTTCAAA GTGCCTAGGA CTCCTGTGTG
  GGGCTGCTCT ATGTCCGTGA CTGTTGCAGG ATTAGACCCA GGATGATTTT CAAGCAAACC
  R
  AGAGGAAAAC ATGACTGGAT CCCAAATCCT GTCATTTAAA GTGAGAATTC TTCCTTTAGT
  GTGAAATGCT AGGGCCACGA GTTATTTTTC CAACTGGGAC TCACTCTGAG TCATGAGGGG
  CAAAACTACC GTCTACTTCA TTTGACACCT TTCCCTCAGC CCATGCACCT AGAAACTTAC
  AGGATGAGGG GCTAGAGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52132925	NES15239906	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49838235					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52132925	NES15239906	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:7885440 () rs orientation: forward

Symbol	Name	Function Class
Gm48614	predicted gene, 48614	within coordinates
Rr220488	regulatory region 220488	1161 bp proximal
Rr223603	regulatory region 223603	296 bp proximal
Rr228933	regulatory region 228933	1241 bp distal