rs49838248 SNP Detail

Summary

• ID
  rs49838248
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:40519720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTGGAGAC AGCCGCGCAC
  CCCCTCCCTG CCTGCCGCGC ACCCCCTCCC TGCCTGCCGC GGTATTGGGC TGCACCCGGG
  GACTTCGGGT GGGTCCCACT CACGGCGCCT GGACACTGTG TAGGGCGGGC TTCAGTTTGC
  CACTGGTCAA GGAGCGGAGT CCCCACTGGG AGGGGCCTCC TTTGCTTCTG GGCTCACAGG
  A
  TTTGAGTTCA AGGTAGCCCA TACTCTGGTG CTGTTCCTAG TTCCTGACCC CTACCCCTGG
  GTCCCTGGGT GCGGGTCCCT GCGGTGCCAG AGACACCTGC CTGCCAGAAA TCCACAATCT
  CACTAAATTC TTCTAGGCCA ACTTTTTTCA CCTTAGGAAA ATTATTCCTG TGTGTTCGAT
  AGGCCTGCAA TATATCTTCA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147693580	ENSMUSSNP84378	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs49838248					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:40519720 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7065	CpG island 7065	98 bp distal
Gm63080	predicted gene, 63080	172 bp upstream
Rr406269	regulatory region 406269	1542 bp proximal
Rr501588	regulatory region 501588	1279 bp distal
Rr501589	regulatory region 501589	716 bp distal
Rr501590	regulatory region 501590	215 bp distal
Rr501591	regulatory region 501591	1167 bp proximal
Tssr4586	transcription start site region 4586	1022 bp downstream
Tssr131170	transcription start site region 131170	1433 bp downstream
Tssr131171	transcription start site region 131171	1403 bp downstream
Tssr131172	transcription start site region 131172	1320 bp downstream
Tssr131173	transcription start site region 131173	1270 bp downstream
Tssr131174	transcription start site region 131174	1242 bp downstream
Tssr131175	transcription start site region 131175	1099 bp downstream
Tssr131176	transcription start site region 131176	1058 bp downstream
Tssr131177	transcription start site region 131177	1003 bp downstream
Tssr131178	transcription start site region 131178	967 bp downstream
Tssr131179	transcription start site region 131179	1862 bp upstream
Zfpm2	zinc finger protein, multitype 2	within coordinates