rs49838576 SNP Detail

Summary

• ID
  rs49838576
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:5642384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGAGACA AATGAATTCC
  ATGCACAGGC CAATGGCCCA TTTCTTTGGA ACAATACTCT AAGCACAGGA AAATTCTAAT
  TAAAAAAAAA AAAACTAAAA CAAAAACCAA AAAACATTAG TGTGGTGAAT TTCCAGAAGA
  CTACGGTAGC CCTTCAGATT TTGTCTTGAA AAGACTGATC CTAGATTAGC AGACAATGGG
  R
  AGTTGTAAAA GTACACTTAT TGTACTAACA GCTAAGACAG AAAATGTACT AGGAGATTCT
  GGTTTAGACA CTATTGTTTT ACTCTTGTTC TGTGAACACA TCTCTTATTG GGTTTGGAGT
  ATAATATGAT TTTATATTGA AAAGTAACAC CCTCAATGAG ATCCTTTAAT ACCATTAAAA
  CCCAGGGTTT TGTTGTTGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145954951	ENSMUSSNP1859097	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49838576					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:5642384 () rs orientation: forward

Symbol	Name	Function Class
4930423M02Rik	RIKEN cDNA 4930423M02 gene	100 bp downstream
Cpgi13998	CpG island 13998	1441 bp proximal
Fam110b	family with sequence similarity 110, member B	1625 bp upstream
Rr588322	regulatory region 588322	1247 bp proximal
Rr588323	regulatory region 588323	1748 bp proximal
Rr588324	regulatory region 588324	1954 bp proximal
Tssr36378	transcription start site region 36378	1700 bp upstream
Tssr36379	transcription start site region 36379	1749 bp upstream
Tssr36380	transcription start site region 36380	1832 bp upstream
Tssr36381	transcription start site region 36381	1884 bp upstream