rs49838849 SNP Detail

Summary

• ID
  rs49838849
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:108533401 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATATGGCT AGGCGTGGAA
  TGCAAAGTAG ATCCTGAGTC CAAATTTTAA TTCATTGATT AATAAGTTAA ATGGATGTAA
  CAGTGAATCC CCTGTAAGAC TGATATTTAA TATCCATTTA AGTCTTAAAC AATTGCGACC
  TTTACACTAC TCTGTGCCGC CACCTGGTGG CAACTGTGTA GATTGCTAGT TGCTTCCTCC
  Y
  CATTCCCACC CCAGGAAGTC CTAAAGTTAC TAGGAACTAC TCTGGACTCC TACACACTGA
  GTGCGCATCG GACAGAAATT AAAGCGCACA CCGCGCACTA AAACTTACAA CTAGCCGGAA
  ATTTCATGTC CAATAGTCAT CAAGATATGA TTCACGTGGT ATAAATTTAG CCAATCAAAT
  TTCTAATTCC TCCAACTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145637780	ENSMUSSNP5646109	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss322388632	CHEV_7_116077708	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49838849					SNP	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:108533401 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19551	CpG island 19551	72 bp proximal
D7Mit127	DNA segment, Chr 7, Massachusetts Institute of Technology 127	1260 bp distal
Eif3f	eukaryotic translation initiation factor 3, subunit F	221 bp upstream
Rr400539	regulatory region 400539	within coordinates
Rr652951	regulatory region 652951	1491 bp distal
Rr652952	regulatory region 652952	within coordinates
Rr652953	regulatory region 652953	24 bp distal
Tssr68456	transcription start site region 68456	211 bp upstream
Tssr68457	transcription start site region 68457	323 bp upstream