rs49839117 SNP Detail

Summary

• ID
  rs49839117
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:40123489 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGT TCCTTGGGGG TGGGAGTGGG
  G
  ATCTTGTGTC CCACTCATTT AAAAC                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss148977351	ENSMUSSNP6611022	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs49839117					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:40123489 () rs orientation: forward

Symbol	Name	Function Class
Cpgi194	CpG island 194	1432 bp proximal
Gm16894	predicted gene, 16894	within coordinates
Il1r2	interleukin 1 receptor, type II	383 bp upstream
Rr29353	regulatory region 29353	911 bp proximal
Rr396010	regulatory region 396010	1407 bp upstream
Tssr62	transcription start site region 62	381 bp upstream
Tssr6411	transcription start site region 6411	404 bp upstream
Tssr6412	transcription start site region 6412	435 bp upstream
Tssr6413	transcription start site region 6413	446 bp upstream
Tssr6414	transcription start site region 6414	869 bp upstream
Tssr6415	transcription start site region 6415	1762 bp upstream
Tssr11414	transcription start site region 11414	1494 bp downstream