rs49839313 SNP Detail

Summary

• ID
  rs49839313
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:7353063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAATAATGTA CCCCACCTAC AGATACCTTA ACCCCAGCAC
  ATTTCGCCTC TCTGCTGATG ACATACGTAA CATTCAGTCC CTCTATGGTA AGCTGAACCT
  Y
  ATTTGCCATT CAATGCCACA CACACATGAA AAATCTCATG TCTATATTTG GGAAACATTA
  CTATCTCATT TTGAGGCCTA TGTGCATGCA CGCTGTGAGT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60680459	NES16229760	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49839313					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60680459	NES16229760	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:7353063 () rs orientation: forward

Symbol	Name	Function Class
Mmp12	matrix metallopeptidase 12	within coordinates
Tssr2759	transcription start site region 2759	480 bp upstream
Tssr83711	transcription start site region 83711	1947 bp downstream
Tssr83712	transcription start site region 83712	1078 bp downstream
Tssr83713	transcription start site region 83713	677 bp downstream
Tssr83714	transcription start site region 83714	493 bp downstream
Tssr83715	transcription start site region 83715	449 bp downstream
Tssr83716	transcription start site region 83716	156 bp downstream
Tssr83717	transcription start site region 83717	145 bp downstream
Tssr83718	transcription start site region 83718	111 bp downstream
Tssr83719	transcription start site region 83719	78 bp downstream
Tssr83720	transcription start site region 83720	45 bp downstream
Tssr83721	transcription start site region 83721	175 bp upstream
Tssr83722	transcription start site region 83722	377 bp upstream
Tssr83723	transcription start site region 83723	501 bp upstream
Tssr83724	transcription start site region 83724	822 bp upstream
Tssr83725	transcription start site region 83725	946 bp upstream
Tssr83726	transcription start site region 83726	1035 bp upstream
Tssr83727	transcription start site region 83727	1647 bp upstream
Tssr83728	transcription start site region 83728	1739 bp upstream
Tssr83729	transcription start site region 83729	1761 bp upstream
Tssr88067	transcription start site region 88067	50 bp upstream
Tssr88068	transcription start site region 88068	4 bp upstream
Tssr88069	transcription start site region 88069	412 bp downstream
Tssr88070	transcription start site region 88070	1688 bp downstream