rs49839456 SNP Detail

Summary

• ID
  rs49839456
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:42457332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCATCTCTTA CTACTGGGGC TTTCTGGAGC CTGGAGAGCC
  CAGGCTGGAG TTTCTGTTCT GGGAAGCTTC TGTCTTTAGC GTTTCTGAAG ACAAAAAACC
  R
  TGGCTCCCAA GGGAAACCCT GCTGACTGAG ACAGGTCAGC TTAGTGGTAG CAATCTTGGA
  GAGTGTCTTC TGAGAGGCTG GGGGTAAGGG AGAGTCAGGC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52629852	NES15518474	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49839456					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52629852	NES15518474	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:42457332 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5505	CpG island 5505	1850 bp distal
Edn1	endothelin 1	within coordinates
Gm47118	predicted gene, 47118	within coordinates
Rr388326	regulatory region 388326	1829 bp downstream
Rr478147	regulatory region 478147	1202 bp distal
Rr478148	regulatory region 478148	108 bp distal
Tssr119444	transcription start site region 119444	1889 bp downstream
Tssr119445	transcription start site region 119445	1171 bp upstream