rs49839565 SNP Detail

Summary

• ID
  rs49839565
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53766731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACGCTCC CTTATCCTTA
  TGAAATCCCC TGCATCTTGA CCAGTGAGGT TGTAATTCTG TTACACAATG AAAAGAATTT
  TAATTCAAGA AAAAACTGTT GACACAACTC TCCCAGTTTC TCATACTAAG CCACAACCTC
  AAAGATGAAA ATATTCTCCC AAAACCTCCA GTTTCGTACC AAAGACTTAG AGCTTCTAGA
  S
  GCAATCTGAA GCACTTTATG TAACTACCAC TTATTCTCAC TTAATCCCAC TGCAGAGGAG
  TTTGCAGATT TGATGGATAT CCTTTTCAGA GGCAATAGTC CTGATTAGTC CTGCTGGACC
  ACCTCTGCGG CAGCTTCTAG AGCGCCACCA ACTGGCACAA CAGCCTTGGT GCACAGGGAC
  CCTCTCCAGC CCTGGACAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss137758500	ENSMUSSNP3842103	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49839565					SNP	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53766731 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr256685	regulatory region 256685	within coordinates
Rr263732	regulatory region 263732	within coordinates