rs49840537 SNP Detail

Summary

• ID
  rs49840537
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:139810518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TTTCTGTGCA GCTAATCAGG AAGATGTTAT CTTAATCAAA
  ATATTCTCAG TGATGTCTGA GGTCTTAATT TCCATTTCAG AAAAATGAAT TTTCGTTAAA
  M
  CTTTGTTGTG CAAAAAATAA AGTATGGTTT TAGCGCCTGG TGATATGTAT TTGTCACCTG
  TTGGAAAGAT ATGTTACTCT TGTTTTCAGT TAGTGGAGGT A                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss134476945	ENSMUSSNP2252780	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49840537					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:139810518 () rs orientation: forward

Symbol	Name	Function Class
Rr6771	regulatory region 6771	1953 bp distal
Rr9256	regulatory region 9256	318 bp distal
Vsig1	V-set and immunoglobulin domain containing 1	within coordinates