rs49841309 SNP Detail

Summary

• ID
  rs49841309
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:81108766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCAGGAA ATAGTTACTT
  CATTTCAATT GACAATTGCT CCTAAACTTA TTTCATCCCT TTTTTTTTTT TTTTTTTAAG
  AACAGATGAT GGTTGAATGC CTGTTGCTCC TCACCAGGGA AGGCATCAGG CAAGGCCACC
  AGGTTTGTCA CAGGTGTGAA GGCGCTGATC CTCACTATTC CCTGTCAGCT GCCCGTGGTG
  M
  CACAATGCAC ACTCACCACA GAGTGCTCAG AATCCCAATT TGGTTTTTAA TGTTAAAGAT
  TGCTTTGTGC ATTGTGGTTA CATTCGTTTT TGTTTTACAT TTAAGTCTAT GGGGGTGGGG
  GAATTGCGCC ACAGCACAAG TGTGGAAACC AGAAGACGAC TGGAAGGAGT TGATTCTTCC
  CTTCTGCCAG GTGGTCTCGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss61025750	NES16100227	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs49841309					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61025750	NES16100227	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:81108766 () rs orientation: forward

Symbol	Name	Function Class
Ap3b2	adaptor-related protein complex 3, beta 2 subunit	1381 bp downstream
Cpeb1os1	cytoplasmic polyadenylation element binding protein 1, opposite strand 1	1012 bp downstream