rs49842021 SNP Detail

Summary

• ID
  rs49842021
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:67016533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGTGTGGA GCTGCACCAG
  AATTATGTTG GGGTTTATAA AAGTCAGAAC TGCCTACTGT TAGCTGAATT TTTGAATAAA
  TATAGGGGGC AGGCACTCCA GCACAGGCAT TCATAGTATG TCTTCAGGCA ACTGTCACTT
  CAGGATCTCT GCAATGGTGT CTGGGGAACT CCCTTCCTCC TCCCAAGGTG CAGCTATGTC
  W
  GAACAGGAAG GCCAGATTGG TGTCAGGTCC TAAAGAGTCT CATGGGTAGA GACACTTGCA
  CCTTGGTTCA GCTCACACTC TGGGCATTCA GGCAGAGAGT CCTGAGGGAA AATGTTCCTA
  GCTGAGACTC CGTGGGCTCT GGGCTGGACC TGGGGTTTCC TGAGTTGATT TCTAGGTATC
  CTGGTGCTGC AGAAACAGCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss63541951	NES17020716	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49842021					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63541951	NES17020716	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:67016533 () rs orientation: forward

Symbol	Name	Function Class
Gm63615	predicted gene, 63615	within coordinates
Rr1092	regulatory region 1092	1051 bp distal
Rr404420	regulatory region 404420	713 bp upstream
St3gal1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	within coordinates
Tssr134620	transcription start site region 134620	1769 bp downstream