rs49842058 SNP Detail

Summary

• ID
  rs49842058
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29894552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCGCCAGA TCTGAGGACT
  ACGGATTCCG GATCTACAGG GTGCAGGGGT GCTGGACTGG AGTGTCCCGT CTCACTTACG
  GATCCGGCGG TCCGCGGTCT TGCTCGCCTG CTGCAGGGCC TCCGCTGTGT CCGGTTCGGG
  AGGGCGGGGC CGGTGACTCA GGCAGCTACT CCGGGTTAGA CCCTGCCGCC ACCCAGCCGT
  Y
  GTCTGCGCGG TCCTAGAGCC TCCATTGCAG ACTGCGCCTG CGCGGGAGGG TTATGGTTGC
  AAGTCTCTGC TTAGCTCATC CGTCCCCATA CACACACTGC TGGAAATTCA ACGCTGTCCA
  GATTAAATAG CTTTGAGTAC GAATAAATTA TTCTAACGCC CAGGTACTGG AGCCTCCAGG
  AACTAGATAC AGGGTACCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60991868	NES16142341	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs49842058					SNP	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60991868	NES16142341	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29894552 () rs orientation: forward

Symbol	Name	Function Class
Capns1	calpain, small subunit 1	within coordinates
Cpgi18782	CpG island 18782	1086 bp distal
Cpgi18783	CpG island 18783	within coordinates
Gm26810	predicted gene, 26810	within coordinates
Rr380605	regulatory region 380605	1510 bp upstream
Rr400232	regulatory region 400232	1222 bp downstream
Rr400233	regulatory region 400233	within coordinates
Tssr65662	transcription start site region 65662	1170 bp downstream
Tssr71700	transcription start site region 71700	1984 bp upstream
Tssr71701	transcription start site region 71701	1760 bp upstream
Tssr71702	transcription start site region 71702	1308 bp upstream
Tssr71703	transcription start site region 71703	1094 bp upstream
Tssr71704	transcription start site region 71704	987 bp upstream
Tssr71705	transcription start site region 71705	965 bp upstream
Tssr71706	transcription start site region 71706	96 bp upstream
Tssr71707	transcription start site region 71707	84 bp upstream
Tssr71708	transcription start site region 71708	37 bp upstream
Tssr71709	transcription start site region 71709	94 bp downstream
Tssr71710	transcription start site region 71710	436 bp downstream