rs49842158 SNP Detail

Summary

• ID
  rs49842158
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:124138168 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAGGCTGCA GCTTCAGTAC ATAGGGCCGA ACCTGCACAC
  ACTACCACCT TTGCCACCCT CGTCTGCTGC CTCTTGTACG TCTTTCCCTG GGCCTTGATG
  W
  GGTTGAGTCT ACATGGCTGA CTCGATCGTT TCAGGACTTG AAGCCTAAGA GCCTGGATGT
  ACGGCAAGAG GAGCTAGGGG CCATGGTGGA CAAGGAGATG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60835821	NES16016995	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49842158					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60835821	NES16016995	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:124138168 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16597	CpG island 16597	1963 bp distal
Hip1r	huntingtin interacting protein 1 related	within coordinates
Rr620318	regulatory region 620318	1368 bp distal
Rr620319	regulatory region 620319	876 bp proximal
Tssr48831	transcription start site region 48831	1385 bp downstream