rs49843169 SNP Detail

Summary

• ID
  rs49843169
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:123258783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGCTGTC CTGGAACTCA
  TTCTGTAGAC CAGGCTGGCC TCGAACTCAG AAATCTGCCT GCCTCTGCCT CCCAAGTGCT
  GGGATTAAAG GCATGTGCCA TCACTGCCCG GCTGTATGCA AATTCTAATG GTGTCTTTTT
  TGAGGAATAT GTCATTGAGA ATATGAATAG TTTATTACTT TATTTTTGTG GCTAAAGTTG
  K
  TTTTCTGTAA CCTAATGTAC AAAACACTAC ATTTTTCGAG TTTCAATTGG ATGATTCCCC
  ACCTGTCCAA TTTCTAAATA GGAAATTTAT GTTAAGATAA ATTAAAATTT TCCCGGCCCA
  AGATAGTTTT GGCTCATGTT TCATCACAGC AATAGAAAAG TGAAAAGATC CAAAAGTTAT
  CTATCATGAT CACTTCAGTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60936914	NES16189362	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49843169					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60936914	NES16189362	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:123258783 () rs orientation: forward

Symbol	Name	Function Class
Clec4e	C-type lectin domain family 4, member e	within coordinates
Tssr58808	transcription start site region 58808	906 bp upstream
Tssr58809	transcription start site region 58809	1568 bp upstream
Tssr58810	transcription start site region 58810	1594 bp upstream
Tssr58811	transcription start site region 58811	1630 bp upstream
Tssr63019	transcription start site region 63019	252 bp upstream
Tssr63020	transcription start site region 63020	669 bp downstream
Tssr63021	transcription start site region 63021	755 bp downstream
Tssr63022	transcription start site region 63022	790 bp downstream
Tssr63023	transcription start site region 63023	818 bp downstream
Tssr63024	transcription start site region 63024	921 bp downstream
Tssr63025	transcription start site region 63025	974 bp downstream
Tssr63026	transcription start site region 63026	985 bp downstream
Tssr63027	transcription start site region 63027	1034 bp downstream
Tssr63028	transcription start site region 63028	1047 bp downstream
Tssr63029	transcription start site region 63029	1078 bp downstream
Tssr63030	transcription start site region 63030	1108 bp downstream
Tssr63031	transcription start site region 63031	1165 bp downstream
Tssr63032	transcription start site region 63032	1189 bp downstream
Tssr63033	transcription start site region 63033	1214 bp downstream
Tssr63034	transcription start site region 63034	1233 bp downstream
Tssr63035	transcription start site region 63035	1254 bp downstream
Tssr63036	transcription start site region 63036	1308 bp downstream
Tssr63037	transcription start site region 63037	1338 bp downstream
Tssr63038	transcription start site region 63038	1375 bp downstream
Tssr63039	transcription start site region 63039	1434 bp downstream
Tssr63040	transcription start site region 63040	1492 bp downstream
Tssr63041	transcription start site region 63041	1541 bp downstream
Tssr63042	transcription start site region 63042	1566 bp downstream
Tssr63043	transcription start site region 63043	1576 bp downstream
Tssr63044	transcription start site region 63044	1598 bp downstream
Tssr63045	transcription start site region 63045	1689 bp downstream
Tssr63046	transcription start site region 63046	1708 bp downstream
Tssr63047	transcription start site region 63047	1731 bp downstream
Tssr63048	transcription start site region 63048	1759 bp downstream
Tssr63049	transcription start site region 63049	1774 bp downstream
Tssr63050	transcription start site region 63050	1798 bp downstream
Tssr63051	transcription start site region 63051	1850 bp downstream