rs49843183 SNP Detail

Summary

• ID
  rs49843183
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:57909945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCTG CTTCTCCAAG GGTACAGGTA
  K
  CCCGAGGGCT TAGGCTGTCA CGTGT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss144931854	ENSMUSSNP4282198	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
ss322670109	CHEV_8_59935708	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49843183					SNP	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:57909945 () rs orientation: forward

Symbol	Name	Function Class
Rr663749	regulatory region 663749	235 bp proximal
Scrg1	scrapie responsive gene 1	within coordinates
Tssr77422	transcription start site region 77422	1007 bp downstream
Tssr77423	transcription start site region 77423	914 bp downstream
Tssr77424	transcription start site region 77424	893 bp downstream
Tssr77425	transcription start site region 77425	875 bp downstream
Tssr77426	transcription start site region 77426	827 bp downstream