rs49843287 SNP Detail

Summary

• ID
  rs49843287
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174314214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAGAAATC AAGAGATCTG
  CTCTCCAGAT TGACTGTCAT CAATGTTTGG CATCATGGTA GCATGAGCTG AGACCAACAG
  GAAGACACTC CACGTGGGTG GCCAGCTTTC TAGATGTCCG TGGGGGTGAG GGGCGCTATA
  ACATGGGGGA TTTCAGTCAG AACAACCCAG GTCACTCAGG CCATCATGCC ATCACTGGGG
  T
  TCAGCCACGA CACCGTGAGT CTGTCAGGTA TCAGTCAGGG CACTCCAGCC ACCACAAGCC
  GTCGGGGTTC AGTCAGGTCC CGGTGAGTCT GTCAGGTATC AGTCAGGAAA CTCCAGGATA
  CCCTGGATAC GTCGGCGCTC AGGACACCCC AAAACCCTGT GAAGCCCTCG GGCCTCGTGC
  TCTGTGACCC CTGGAGTCAC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148343917	ENSMUSSNP6290969	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49843287					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174314214 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12865	CpG island 12865	within coordinates
Gm38546	predicted gene, 38546	668 bp upstream
Prelid3b	PRELI domain containing 3B	within coordinates
Rr397557	regulatory region 397557	456 bp upstream
Rr572131	regulatory region 572131	1494 bp distal
Rr572132	regulatory region 572132	1105 bp distal
Rr572133	regulatory region 572133	within coordinates
Rr572134	regulatory region 572134	181 bp proximal
Rr572135	regulatory region 572135	467 bp proximal
Rr572136	regulatory region 572136	576 bp proximal
Rr572137	regulatory region 572137	650 bp proximal
Rr572138	regulatory region 572138	775 bp proximal
Tssr28035	transcription start site region 28035	457 bp downstream
Tssr28036	transcription start site region 28036	528 bp downstream