rs49844664 SNP Detail

Summary

• ID
  rs49844664
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:13853431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCAGTTGG GGTGGAGAAT
  CATAAGCTCC TCCTTCCTCC ATGCTGGGCC GGTGCCTTCC CTTGGAGTTG TGCAGGACCT
  GGAGATTTCA CTTCAGATAG TCTAAGTAGC ATATGTGGTC ACGAATACTG TATTATAGTA
  TATTGTCTGT AGAAAAACCT CTGTCTTAAA AGGCAAGTTT GTTAATCATG TTTAAATTAG
  R
  AAACATTTTA AAACCTTCTG AGCATTTGTC TTGCCATGTC AATGCGGCTC CTAGGGTATT
  GTTCATGTGC CTTTCTTTTT GATGCTGTGT TAAGACTTTT CTGGTTTCTG TCACAGTGTC
  ATTGAAGACT GTCTGATACC TATCTGCTGT GGATTATATG AACTCTTAAG TGGGGTTCTT
  CTTGTCCTGC CTGATGCTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61750094	NES17677510	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	A	G	G	A	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49844664					SNP	G	G	A	G	G	G	A	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61750094	NES17677510	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:13853431 () rs orientation: forward

Symbol	Name	Function Class
Lyst	lysosomal trafficking regulator	within coordinates
Rr282634	regulatory region 282634	831 bp distal