rs49844826 SNP Detail

Summary

• ID
  rs49844826
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:114861236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACTG GCCACTTTAC CTGCACGGCT
  M
  CCCTCGAGCA AGTTACAGAT GAGGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss145783828	ENSMUSSNP1928899	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49844826					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:114861236 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi21082	CpG island 21082			804 bp distal
D8Mit139	DNA segment, Chr 8, Massachusetts Institute of Technology 139			455 bp proximal
Gm56821	predicted gene, 56821			1511 bp upstream
Nudt7	nudix hydrolase 7			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr401147	regulatory region 401147			787 bp downstream
Rr670353	regulatory region 670353			844 bp distal
Rr670354	regulatory region 670354			within coordinates
Tssr79531	transcription start site region 79531			899 bp downstream
Tssr79532	transcription start site region 79532			866 bp downstream
Tssr79533	transcription start site region 79533			834 bp downstream