rs49844850 SNP Detail

Summary

• ID
  rs49844850
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128048228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCGATACC AAGTCTGGCA
  AGATAAAAGA AGTATTTTTT TAAAGTAGTT TAATCCGGGG GGGGCGGGGG GAGTGACACA
  CAGCCCTCAG GAGGCAGAGG CAGGCAGTTT TCTATGAGTT CGAGGCCAGT CTGGTCTACA
  TACCAAGTTC CAGGACAGGC AGAGCACCAC ACATTATTTA AAAAAAAAAA AAAAAAAAAA
  R
  CGTAAATCCG TTTCCCAGAG CCTCAGCATT CTCTTTGGAC AGAATGTGTC TACATTCAAG
  CTTACTGTTC TGTCTTCTGA GACAGAGTTA CTATGTAACC TTTGCAGGCC TCAAACTCTA
  GATCCTGCTG CCTCAATTTC CCAAGTGCCA GGTTGTGCTC AGTTTTTTTT TGTTGTTTTT
  TTTTTGTTGT TTTTGTTTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147738277	ENSMUSSNP1558668	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49844850					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128048228 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2387	CpG island 2387	305 bp distal
Cpgi2388	CpG island 2388	720 bp proximal
Rr224447	regulatory region 224447	27 bp distal
Rr224448	regulatory region 224448	372 bp proximal
Rr402345	regulatory region 402345	348 bp downstream
Rr402346	regulatory region 402346	445 bp upstream
Spryd4	SPRY domain containing 4	565 bp upstream
Tssr99849	transcription start site region 99849	584 bp upstream
Tssr99850	transcription start site region 99850	536 bp upstream