rs49845113 SNP Detail

Summary

• ID
  rs49845113
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:111861378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAGAAAC AAAAATACCC
  TAAGTTTATC TCTTCAAATT TCCAATTGTC AGTTATAGAC CTCTTTTTAG TCTATCTCAT
  TAGCTTCTGT AAAGGAATTT TAATCCAGCA ACATGACTGC TCTGATCACA TCCAAAGCCT
  TCTAGGTCTG TATGATTTGG CTGAAATGCA GACACATCAG TACCACACAA ATTTAATCCC
  Y
  CTGGTTGTAA TCCTTTAACA CACACTGTTG ATCCCAAACA ATAATGTATA ACTGAGGGGA
  AGACAAAGTG AAGAATCTGA GAAAATTTTC ACAGAATGAG GCAGAGATAG AATATGCCCA
  ACTCTCAGGA GAAAAGCTAT TTAAGTGCAG TGCAGGGAGA GAGTTCAGTT TGTCAATGAG
  TTGGCAAAAA GTCAGTTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325913369	CHEV_X_110065290	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs49845113					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:111861378 () rs orientation: forward

Symbol	Name	Function Class
Rr2637	regulatory region 2637	1378 bp distal
Rr6449	regulatory region 6449	1626 bp distal