rs49845921 SNP Detail

Summary

• ID
  rs49845921
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:67469718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCGGCGCG CACAAGCGTT
  ACAGCTTAGG GCACAAGGCC GACTGCTCCT CTATACTCGG TCTGGAACTT CATTTATGCG
  TAAAAGGGAC TTCTGGACTT TGGGCTCACC ACCCTAGGAA CCCCAAGTGG TCGGTCCGCA
  GTCTGTCCCC AGTGTTCAGA GGAGCCGCAG GGGAGGTGGG GTGGTTCCTC AGTGCAGACC
  W
  CTAAGAGCCA AGCGTCCCAC TGAGTTCTAG AGGTAAGGCA CCCACACACT ATCTTCCAGC
  AGGGCACCGC CACCCCTGAA CTTGTCACTG GGAAGGAGGG AGGTGAGACG CCACTGACAG
  TATGCTTTGG AGAAGGCAGC AGGGAGCAAG GAGAAAGGAA CAATTCATTC GCTTCCTGAG
  GGGTATAATT TGGGCGGCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62435919	NES17250935	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49845921					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62435919	NES17250935	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:67469718 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6656	CpG island 6656	1597 bp distal
Cpgi6657	CpG island 6657	14 bp distal
Cpgi6658	CpG island 6658	948 bp proximal
Cpgi6659	CpG island 6659	1912 bp proximal
Ebf2	early B cell factor 2	1023 bp upstream
Gm20675	predicted gene 20675	168 bp downstream
Rr297417	regulatory region 297417	1717 bp distal
Rr297418	regulatory region 297418	within coordinates
Tssr126327	transcription start site region 126327	913 bp upstream
Tssr126328	transcription start site region 126328	1017 bp upstream
Tssr126329	transcription start site region 126329	1166 bp upstream
Tssr126330	transcription start site region 126330	1633 bp upstream