rs49847041 SNP Detail

Summary

• ID
  rs49847041
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:64646302 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTCTCCA TTGGTGAACA
  AAAGTTAGAA TACATGTTCA TTGTTAAAAA TAAGAAACAG AACACGGGTG ATGACCAACC
  TAAACATCAC CAGTGTGGTC TTACACAAAT AGGTTCCCTT TTCTTATTTC ATTTAGAAAC
  CCACTAAGCA ATTGGTGTAA TACTCCATTT AGAGCAAGAA CACCACAGAG TTGTCTCTGA
  Y
  ATCCACATAA ATGCTATGAC ATGCTTGCCT CCCTATATAC ACACATCATG TATGTGTGTG
  TGTAAACACA TACACACACA CACACACACA CACACACACA CACAGAGAGA GAGAGAGAGA
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA TATTAAAAAT AAATCTAGTA CCAGAACCTG
  AGTTTGATCC CCCAAACCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61173164	NES16687510	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49847041					SNP	T	T	T	T	T	T	T	T	T	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61173164	NES16687510	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:64646302 () rs orientation: forward

Symbol	Name	Function Class
Gm57288	predicted gene, 57288	within coordinates
Rr118672	regulatory region 118672	299 bp proximal
Rr129656	regulatory region 129656	700 bp proximal
Rr131555	regulatory region 131555	1760 bp distal
Rr367844	regulatory region 367844	961 bp downstream
Tssr46401	transcription start site region 46401	1086 bp downstream