rs49847076 SNP Detail

Summary

• ID
  rs49847076
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:70935342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAAGCAGA AGGTTAAAAG
  TTACCATTGT TTCACTTCCT TCTGAACCCT GCAAAATCTG AGCACAACAC GGTTGTGTTT
  GAATGGGAAA CAGAAGCACA GAGAAGCTCA TCACTGCCCC ATGAGGCCCA CAGCAAATCG
  GAGAAACCCA TGCTCAGAAT GAGTGGAGCC TGAGACAAGA GAAGCCTGGG AGAGAAGAGT
  C
  CAAGGCTGTG ATCTGGGAGG GCCCCTCTCC CCTACCACGC CCCCCTTCCC CCTCCCTTAG
  CTTCCATGAG CCTCCACATC ACTGATTCTT GTTTGAAGGA GGCCTCTGTG CCTTTGAGAT
  TTAAGATACC CATCGCTGTG CACAAGTGTT TGTTTCTTTC CCCTGCCCCA CATCCCTTCC
  TTTATTTGGG ACACCAACTC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146739053	ENSMUSSNP2954544	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49847076					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:70935342 () rs orientation: forward

Symbol	Name	Function Class
Rr397033	regulatory region 397033	1353 bp downstream
Rr558671	regulatory region 558671	1378 bp distal
Rr558672	regulatory region 558672	521 bp distal
Rr558673	regulatory region 558673	within coordinates