rs49847141 SNP Detail

Summary

• ID
  rs49847141
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172302716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTCA GAGGGCCGAC AGCTGGGTAG
  Y
  TCGAAGCACG TGCATATGTG ATTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120011351	PARCsnp_1.19754	PARC_SEQ	INBRED	f	SNP		T	C
ss120014416	PARCsnp_1.09785	PARC_SEQ	INBRED	f	SNP		T	C
ss146193208	ENSMUSSNP1605156	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss320125596	CHEV_1_174405280	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs49847141					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172302716 () rs orientation: forward

Symbol	Name	Function Class
Gm7804	predicted gene 7804	335 bp downstream
Gm70809	predicted gene, 70809	176 bp downstream
Gm70814	predicted gene, 70814	within coordinates
Rr396588	regulatory region 396588	1811 bp downstream
Rr423578	regulatory region 423578	within coordinates
Slamf9	SLAM family member 9	211 bp upstream
Tssr10198	transcription start site region 10198	222 bp upstream
Tssr10199	transcription start site region 10199	238 bp upstream
Tssr10200	transcription start site region 10200	278 bp upstream
Tssr15219	transcription start site region 15219	16 bp downstream